Ca_20874, Ca_20874_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_20874
Unique NameCa_20874_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length261
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca3chromosomeCa3:33746126..33746478 -Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR196Pisum sativum Cameor genome v1aPisum sativum
capsR213Pisum sativum Cameor genome v1aPisum sativum
capsR237Pisum sativum Cameor genome v1aPisum sativum
cavuR163Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR165Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR219Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR199Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR254Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0333Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0149Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0681Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0896Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL478Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR189Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR205Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR201Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR201Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR235Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR232Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR196Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR273Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR154Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR156Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR207Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR081Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR082Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL450Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR196Cicer arietinum
cacarR205Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_027332471.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_20874-CDS1Ca_20874-CDS1Cicer arietinumCDS
Ca_20874-CDS2Ca_20874-CDS2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_20874_v1.0_kabuliCa_20874_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_20874 vs. TrEMBL
Match: I1MWS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.152e-24
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            MSLK S SSENL+LPVSDPP   D      +DD + +GS+MTKRGAFAA+SYMSCAVLLVMFNKAALSSY+FPSAN I LLQ+
Sbjct:    1 MSLKPSNSSENLMLPVSDPPKSHD------ADDKLFKGSAMTKRGAFAAVSYMSCAVLLVMFNKAALSSYNFPSANVITLLQM 77          
BLAST of Ca_20874 vs. TrEMBL
Match: C6TGJ6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.152e-24
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            MSLK S SSENL+LPVSDPP   D      +DD + +GS+MTKRGAFAA+SYMSCAVLLVMFNKAALSSY+FPSAN I LLQ+
Sbjct:    1 MSLKPSNSSENLMLPVSDPPKSHD------ADDKLFKGSAMTKRGAFAAVSYMSCAVLLVMFNKAALSSYNFPSANVITLLQM 77          
BLAST of Ca_20874 vs. TrEMBL
Match: M5XBU0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007815mg PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.034e-24
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 MSLKASYSSENLILPVSDPPNDEDRERLL--KSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            MSLKAS S +NLILPVSD P D +RERL+   +D+ + RGS+MT+RGA+AAISYM+CAVLLVMFNKAALSSY FPSAN I L Q+
Sbjct:    1 MSLKASSSGKNLILPVSDSPRDLERERLVGDDNDEKLFRGSAMTRRGAYAAISYMACAVLLVMFNKAALSSYKFPSANVITLFQM 85          
BLAST of Ca_20874 vs. TrEMBL
Match: I1M9I8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.987e-23
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            MSL+ S SSENL+LPVSDPP  +D      +D+ + +GS+MTKRGAFAA+SYMSCAVLLVMFNKAALSSY+FPSAN I LLQ+
Sbjct:    1 MSLRLSNSSENLMLPVSDPPKTQD------ADNKLFKGSAMTKRGAFAAVSYMSCAVLLVMFNKAALSSYNFPSANVITLLQM 77          
BLAST of Ca_20874 vs. TrEMBL
Match: I3RZB0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.208e-23
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 MSLK-ASYSSENLILPVSDPPNDEDRERLL-KSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            MSLK +S SSENL+LPVSDPP D+       K+DD + +GS+MTKRGA+AAISYMSCAVLLV+FNKAALSSYDFPSAN I LLQ+
Sbjct:    2 MSLKPSSNSSENLMLPVSDPPRDQTGGGAAPKADDKLFKGSAMTKRGAYAAISYMSCAVLLVIFNKAALSSYDFPSANVITLLQM 86          
BLAST of Ca_20874 vs. TrEMBL
Match: B9RP33_RICCO (UDP-sugar transporter, putative OS=Ricinus communis GN=RCOM_0923870 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.409e-22
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 1
Query:   13 ASYSSENLILPVSDPPNDE-DRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            AS SS N ILP+S  P+D+ ++ERL+K DD I RGS+MTKRGA+AAISYMSCAVLLV+FNKAALSS++FPSAN I L Q+
Sbjct:    2 ASNSSNNSILPLSTSPSDDKEKERLIKGDDKIFRGSAMTKRGAYAAISYMSCAVLLVIFNKAALSSFNFPSANVITLFQM 81          
BLAST of Ca_20874 vs. TrEMBL
Match: K7KTH9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.821e-22
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            M LK SYSSENL+LPVSDPPNDEDRE LLK+D+      +   R  +AAISYMSCAVLLV+FNKAALSSY FPSA+ I LLQ+
Sbjct:    1 MPLKPSYSSENLMLPVSDPPNDEDREWLLKADNY----KTFQTRRIYAAISYMSCAVLLVLFNKAALSSYHFPSASVITLLQM 79          
BLAST of Ca_20874 vs. TrEMBL
Match: K7KTH8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.821e-22
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            M LK SYSSENL+LPVSDPPNDEDRE LLK+D+      +   R  +AAISYMSCAVLLV+FNKAALSSY FPSA+ I LLQ+
Sbjct:    1 MPLKPSYSSENLMLPVSDPPNDEDREWLLKADNY----KTFQTRRIYAAISYMSCAVLLVLFNKAALSSYHFPSASVITLLQM 79          
BLAST of Ca_20874 vs. TrEMBL
Match: B9HAF2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_867756 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.283e-21
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1
Query:   13 ASYSSENLILPVSDPPNDEDR----ERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            AS SS N ILPVS  P D++R    ERL+K D+   RGSSMTKRGA+AAISYMSCAVLLV+FNKAALSSY+FPSAN I L Q+
Sbjct:    2 ASSSSSNSILPVSVSPLDDERQREKERLIKGDEKAFRGSSMTKRGAYAAISYMSCAVLLVLFNKAALSSYNFPSANVITLFQM 84          
BLAST of Ca_20874 vs. TrEMBL
Match: G7I715_MEDTR (UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter OS=Medicago truncatula GN=MTR_1g012590 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.732e-21
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
            MSLK S SSE  +LP+SDPP ++        DD + +GS+MTKRGA+AAISYMSCAVLLVMFNKAALSSY+FPSAN I LLQ+
Sbjct:    1 MSLKTSNSSEKPMLPLSDPPKNQ-------IDDKLFKGSAMTKRGAYAAISYMSCAVLLVMFNKAALSSYNFPSANVITLLQM 76          
BLAST of Ca_20874 vs. DB:Swiss
Match: NSTU3_ARATH (Nucleotide-sugar uncharacterized transporter 3 OS=Arabidopsis thaliana OX=3702 GN=At4g32272 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.043e-24
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   28 ENLILPVSDPP----NDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249
             N +LPVSDPP    ND D + +   DD + +GS+MTKRGA+AA+SYM+CAV+LV+FNKAALSSYDFP  N I L Q+
Sbjct:    3 NNPVLPVSDPPLAGENDSDGKGV---DDRLFKGSAMTKRGAYAALSYMACAVMLVLFNKAALSSYDFPCVNVITLFQM 77          
The following BLAST results are available for this feature:
BLAST of Ca_20874 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1MWS9_SOYBN6.152e-2472.29Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6TGJ6_SOYBN6.152e-2472.29Putative uncharacterized protein OS=Glycine max PE... [more]
M5XBU0_PRUPE8.034e-2470.59Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
I1M9I8_SOYBN3.987e-2369.88Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I3RZB0_LOTJA5.208e-2371.76Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
B9RP33_RICCO4.409e-2270.00UDP-sugar transporter, putative OS=Ricinus communi... [more]
K7KTH9_SOYBN9.821e-2269.88Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7KTH8_SOYBN9.821e-2269.88Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9HAF2_POPTR1.283e-2169.88Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
G7I715_MEDTR3.732e-2167.47UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose tr... [more]

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BLAST of Ca_20874 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
NSTU3_ARATH3.043e-2460.26Nucleotide-sugar uncharacterized transporter 3 OS=... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_20874_v1.0_kabuli ID=Ca_20874_v1.0_kabuli; Name=Ca_20874; organism=Cicer arietinum; type=mRNA; length=261bp
ATGTCTCTGAAAGCATCTTATTCATCGGAGAATCTGATTCTTCCGGTATC
CGATCCTCCAAACGATGAAGACCGAGAGAGGCTTTTGAAGAGCGATGATA
CGATCCTCAGAGGTTCTTCCATGACTAAACGTGGAGCATTCGCTGCTATC
TCTTACATGTCTTGCGCTGTGCTCTTGGTGATGTTCAATAAGGCGGCTCT
TTCATCTTATGACTTTCCATCTGCAAATTTCATCGCTCTTCTTCAGGTTC
ATCCTCATTAA
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protein sequence of Ca_20874_v1.0_kabuli

>Ca_20874_v1.0_kabuli ID=Ca_20874_v1.0_kabuli; Name=Ca_20874_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=86bp
MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAI
SYMSCAVLLVMFNKAALSSYDFPSANFIALLQVHPH
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mRNA from alignment at Ca3:33746126..33746478-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_20874_v1.0_kabuli ID=Ca_20874_v1.0_kabuli; Name=Ca_20874; organism=Cicer arietinum; type=mRNA; length=353bp; location=Sequence derived from: Ca3:33746126..33746478- (Cicer arietinum
ATGTCTCTGAAAGCATCTTATTCATCGGAGAATCTGATTCTTCCGGTATC CGATCCTCCAAACGATGAAGACCGAGAGAGGCTTTTGAAGAGCGATGATA CGATCCTCAGAGGTTCTTCCATGACTAAACGTGGAGCATTCGCTGCTATC TCTTACATGTCTTGCGCTGGTTCGCTTCATACTATTTTTATTTTGAAACC ACTGTTTAATTAATTAATTAATTGTTTAGGCTTTCATTAATTCTCTATTT TTGTTTTGTAGTGCTCTTGGTGATGTTCAATAAGGCGGCTCTTTCATCTT ATGACTTTCCATCTGCAAATTTCATCGCTCTTCTTCAGGTTCATCCTCAT TAA
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Coding sequence (CDS) from alignment at Ca3:33746126..33746478-

>Ca_20874_v1.0_kabuli ID=Ca_20874_v1.0_kabuli; Name=Ca_20874; organism=Cicer arietinum; type=CDS; length=261bp; location=Sequence derived from: Ca3:33746126..33746478- (Cicer arietinum
ATGTCTCTGAAAGCATCTTATTCATCGGAGAATCTGATTCTTCCGGTATC
CGATCCTCCAAACGATGAAGACCGAGAGAGGCTTTTGAAGAGCGATGATA
CGATCCTCAGAGGTTCTTCCATGACTAAACGTGGAGCATTCGCTGCTATC
TCTTACATGTCTTGCGCTGTGCTCTTGGTGATGTTCAATAAGGCGGCTCT
TTCATCTTATGACTTTCCATCTGCAAATTTCATCGCTCTTCTTCAGGTTC
ATCCTCATTAA
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