Ca_20874, Ca_20874_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_20874 vs. TrEMBL
Match: I1MWS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 6.152e-24 Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 MSLK S SSENL+LPVSDPP D +DD + +GS+MTKRGAFAA+SYMSCAVLLVMFNKAALSSY+FPSAN I LLQ+ Sbjct: 1 MSLKPSNSSENLMLPVSDPPKSHD------ADDKLFKGSAMTKRGAFAAVSYMSCAVLLVMFNKAALSSYNFPSANVITLLQM 77
BLAST of Ca_20874 vs. TrEMBL
Match: C6TGJ6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 6.152e-24 Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 MSLK S SSENL+LPVSDPP D +DD + +GS+MTKRGAFAA+SYMSCAVLLVMFNKAALSSY+FPSAN I LLQ+ Sbjct: 1 MSLKPSNSSENLMLPVSDPPKSHD------ADDKLFKGSAMTKRGAFAAVSYMSCAVLLVMFNKAALSSYNFPSANVITLLQM 77
BLAST of Ca_20874 vs. TrEMBL
Match: M5XBU0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007815mg PE=4 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 8.034e-24 Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 1 Query: 1 MSLKASYSSENLILPVSDPPNDEDRERLL--KSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 MSLKAS S +NLILPVSD P D +RERL+ +D+ + RGS+MT+RGA+AAISYM+CAVLLVMFNKAALSSY FPSAN I L Q+ Sbjct: 1 MSLKASSSGKNLILPVSDSPRDLERERLVGDDNDEKLFRGSAMTRRGAYAAISYMACAVLLVMFNKAALSSYKFPSANVITLFQM 85
BLAST of Ca_20874 vs. TrEMBL
Match: I1M9I8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.987e-23 Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 MSL+ S SSENL+LPVSDPP +D +D+ + +GS+MTKRGAFAA+SYMSCAVLLVMFNKAALSSY+FPSAN I LLQ+ Sbjct: 1 MSLRLSNSSENLMLPVSDPPKTQD------ADNKLFKGSAMTKRGAFAAVSYMSCAVLLVMFNKAALSSYNFPSANVITLLQM 77
BLAST of Ca_20874 vs. TrEMBL
Match: I3RZB0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 5.208e-23 Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 Query: 1 MSLK-ASYSSENLILPVSDPPNDEDRERLL-KSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 MSLK +S SSENL+LPVSDPP D+ K+DD + +GS+MTKRGA+AAISYMSCAVLLV+FNKAALSSYDFPSAN I LLQ+ Sbjct: 2 MSLKPSSNSSENLMLPVSDPPRDQTGGGAAPKADDKLFKGSAMTKRGAYAAISYMSCAVLLVIFNKAALSSYDFPSANVITLLQM 86
BLAST of Ca_20874 vs. TrEMBL
Match: B9RP33_RICCO (UDP-sugar transporter, putative OS=Ricinus communis GN=RCOM_0923870 PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 4.409e-22 Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 1 Query: 13 ASYSSENLILPVSDPPNDE-DRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 AS SS N ILP+S P+D+ ++ERL+K DD I RGS+MTKRGA+AAISYMSCAVLLV+FNKAALSS++FPSAN I L Q+ Sbjct: 2 ASNSSNNSILPLSTSPSDDKEKERLIKGDDKIFRGSAMTKRGAYAAISYMSCAVLLVIFNKAALSSFNFPSANVITLFQM 81
BLAST of Ca_20874 vs. TrEMBL
Match: K7KTH9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 9.821e-22 Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 M LK SYSSENL+LPVSDPPNDEDRE LLK+D+ + R +AAISYMSCAVLLV+FNKAALSSY FPSA+ I LLQ+ Sbjct: 1 MPLKPSYSSENLMLPVSDPPNDEDREWLLKADNY----KTFQTRRIYAAISYMSCAVLLVLFNKAALSSYHFPSASVITLLQM 79
BLAST of Ca_20874 vs. TrEMBL
Match: K7KTH8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 9.821e-22 Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 M LK SYSSENL+LPVSDPPNDEDRE LLK+D+ + R +AAISYMSCAVLLV+FNKAALSSY FPSA+ I LLQ+ Sbjct: 1 MPLKPSYSSENLMLPVSDPPNDEDREWLLKADNY----KTFQTRRIYAAISYMSCAVLLVLFNKAALSSYHFPSASVITLLQM 79
BLAST of Ca_20874 vs. TrEMBL
Match: B9HAF2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_867756 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.283e-21 Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 13 ASYSSENLILPVSDPPNDEDR----ERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 AS SS N ILPVS P D++R ERL+K D+ RGSSMTKRGA+AAISYMSCAVLLV+FNKAALSSY+FPSAN I L Q+ Sbjct: 2 ASSSSSNSILPVSVSPLDDERQREKERLIKGDEKAFRGSSMTKRGAYAAISYMSCAVLLVLFNKAALSSYNFPSANVITLFQM 84
BLAST of Ca_20874 vs. TrEMBL
Match: G7I715_MEDTR (UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter OS=Medicago truncatula GN=MTR_1g012590 PE=4 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.732e-21 Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 1 MSLKASYSSENLILPVSDPPNDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 MSLK S SSE +LP+SDPP ++ DD + +GS+MTKRGA+AAISYMSCAVLLVMFNKAALSSY+FPSAN I LLQ+ Sbjct: 1 MSLKTSNSSEKPMLPLSDPPKNQ-------IDDKLFKGSAMTKRGAYAAISYMSCAVLLVMFNKAALSSYNFPSANVITLLQM 76
BLAST of Ca_20874 vs. DB:Swiss
Match: NSTU3_ARATH (Nucleotide-sugar uncharacterized transporter 3 OS=Arabidopsis thaliana OX=3702 GN=At4g32272 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.043e-24 Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1 Query: 28 ENLILPVSDPP----NDEDRERLLKSDDTILRGSSMTKRGAFAAISYMSCAVLLVMFNKAALSSYDFPSANFIALLQV 249 N +LPVSDPP ND D + + DD + +GS+MTKRGA+AA+SYM+CAV+LV+FNKAALSSYDFP N I L Q+ Sbjct: 3 NNPVLPVSDPPLAGENDSDGKGV---DDRLFKGSAMTKRGAYAALSYMACAVMLVLFNKAALSSYDFPCVNVITLFQM 77 The following BLAST results are available for this feature:
BLAST of Ca_20874 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_20874 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_20874_v1.0_kabuli ID=Ca_20874_v1.0_kabuli; Name=Ca_20874; organism=Cicer arietinum; type=mRNA; length=261bpback to top protein sequence of Ca_20874_v1.0_kabuli >Ca_20874_v1.0_kabuli ID=Ca_20874_v1.0_kabuli; Name=Ca_20874_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=86bpback to top mRNA from alignment at Ca3:33746126..33746478- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_20874_v1.0_kabuli ID=Ca_20874_v1.0_kabuli; Name=Ca_20874; organism=Cicer arietinum; type=mRNA; length=353bp; location=Sequence derived from: Ca3:33746126..33746478- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:33746126..33746478- >Ca_20874_v1.0_kabuli ID=Ca_20874_v1.0_kabuli; Name=Ca_20874; organism=Cicer arietinum; type=CDS; length=261bp; location=Sequence derived from: Ca3:33746126..33746478- (Cicer arietinumback to top |